UJ.UJJJ.U-U
Brief report
Secretory production of an FAD cofactor-containing cytosolic enzyme (sorbitol-xylitol oxidase from Streptomyces coelicolor) using the twin-arginine translocation (Tat) pathway of Corynebacterium glutamicum
Sandra Scheele,1 Dan Oertel,1 Johannes Bongaerts,2 Stefan Evers,2 Hendrik Hellmuth,2 Karl-Heinz Maurer,2t Michael Bott1 and Roland Freudl1*
11nstitut für Bio- und Geowissenschaften 1, Biotechnologie, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany.
2International R&D/Technology Laundry and Home Care, Henkel AG & Co. KGaA, D-40191 Düsseldorf, Germany.
Summary
Carbohydrate oxidases are biotechnologically interesting enzymes that require a tightly or covalently bound cofactor for activity. Using the industrial workhorse Corynebacterium glutamicum as the expression host, successful secretion of a normally cytosolic FAD cofactor-containing sorbitol-xylitol oxidase from Streptomyces coelicolor was achieved by using the twin-arginine translocation (Tat) protein export machinery for protein translocation across the cytoplasmic membrane. Our results demonstrate for the first time that, also for cofactor-containing proteins, a secretory production strategy is a feasible and promising alternative to conventional intracellu-lar expression strategies.
The secretory expression of recombinant proteins can offer significant process advantages over cytosolic production strategies, since secretion into the growth medium greatly facilitates downstream processing and therefore can significantly reduce the costs of producing a
Received 12 September, 2012; revised 8 October, 2012; accepted 13 October, 2012. *For correspondence. E-mail r.freudl@fz-juelich.de; Tel. (+49) 2461 613472; Fax (+49) 2461 612710. Present address: AB Enzymes GmbH, Feldbergstrasse 78, D-64293 Darmstadt, Germany.
doi:10.1111/1751-7915.12005
Funding Information This work was supported by the Bundesministerium für Bildung und Forschung (BMBF) project 'Genomic Design - Doubling Efficiency by Microbial Genomic Design' 0313917C.
desired target protein (Quax, 1997). And, in fact, the enormous secretion capacity of certain Gram-positive bacteria (e.g. various Bacillus species) has been used since many years in industry for the production of mainly host-derived secretory proteins such as proteases and amylases, resulting in amounts of more than 20 g l-1 culture medium (Harwood and Cranenburg, 2008). In contrast, attempts to use Bacillus species for the secretory production of heterologous proteins have often failed or led to disappointing results, a fact that, among other reasons, could in many cases be attributed to the presence of multiple cell wall-associated and secreted proteases that rapidly degraded the heterologous target proteins (Li etal., 2004; Sarvas etal., 2004; Westers etal., 2004). Therefore, an increasing need exists to explore alternative host systems with respect to their ability to express and secrete problematic and/or complex heterologous proteins of biotech-nological interest.
So far, the Gram-positive bacterium Corynebacterium glutamicum has been used in industry mainly for the production of amino acids and other low-molecular weight compounds (Leuchtenberger etal., 2005; Becker and Wittmann, 2011; Litsanov etal., 2012). However, various recent reports have indicated that C. glutamicum might likewise possess a great potential as an alternative host system for the secretory expression of foreign proteins. Corynebacterium glutamicum belongs to a class of diderm Gram-positive bacteria that, besides the cytoplas-mic membrane, possess an additional mycolic acid-containing outer membrane-like structure that acts as an extremely efficient permeability barrier for hydrophilic compounds (Hoffmann etal., 2008; Zuber etal., 2008). Despite this fact, an efficient secretion of various heter-ologous proteins into the growth medium of this microorganism has been observed (e.g. Billman-Jacobe etal., 1995; Meissner etal., 2007; Kikuchi etal., 2009; Tateno etal., 2009; Tsuchidate etal., 2011).
In bacteria, two major export pathways exist for the transport of proteins across the cytoplasmic membrane
that fundamentally differ with respect to the folding status of their respective substrate proteins during the actual translocation step. The general secretion (Sec) system transports its substrates in a more or less unfolded state and folding takes places on the trans side of the membrane after the actual transport event (Yuan etal., 2010; du Plessis etal., 2011). In contrast, the alternative twin-arginine translocation (Tat) system translocates its substrates in a fully folded form and therefore provides an attractive alternative for the secretory production of proteins that cannot be produced in a functional form via the Sec route (Brüser, 2007). Carbohydrate oxidases are biotechnologically interesting enzymes (van Hellemond etal., 2006) that are excluded from Sec-dependent secretion since they depend on a tightly or covalently bound cofactor for their activity and, for this reason, require that their folding and cofactor insertion has to take place in the cytosol. Because C. glutamicum has shown to be an excellent host for the Tat-dependent secretion of the cofactor-less model protein GFP (Meissner etal., 2007; Teramoto etal., 2011), we now asked whether it is likewise possible to secrete a cofactor-containing enzyme into the supernatant of C. glutamicum using the same protein export route.
As a model protein, we chose the sorbitol-xylitol oxidase (SoXy) from Streptomyces coelicolor, a normally cytosolic enzyme that possesses a covalently bound FAD molecule as cofactor (Heuts etal., 2007; Forneris etal., 2008). FAD is incorporated into the apoprotein in a post-translational and self-catalytic process that only occurs if the polypeptide chain has adopted a correctly folded structure (Heuts etal., 2007; 2009). To direct SoXy into the Tat export pathway of C. glutamicum, we constructed a gene encoding a TorA-SoXy hybrid precursor in which SoXy is fused to the strictly Tat-specific signal peptide of the periplasmic Escherichia coli Tat substrate trimethyl-amine N-oxide reductase (TorA) (Fig. 1) which, in our previous study, has been proven to be a functional and strictly Tat-specific signal peptide also in C. glutamicum (Meissner etal., 2007). The corresponding torA-soxy gene was cloned into the expression vector pEKEx2 (Eik-
manns etal., 1991) underthe control of an IPTG-inducible Ptac promotor. After transformation of the resulting plasmid pTorA-SoXy into the C. glutamicum ATCC13032 wildtype strain, two independent colonies of the resulting recombinant C. glutamicum (pTorA-SoXy) strain and, as a control, a colony of a strain that contained the empty expression vector without insert [C. glutamicum (pEKEx2)] were grown in CGXII medium (Keilhauer etal., 1993) at 30°C for 16 h in the presence of 1 mM IPTG. Subsequently, the proteins present in the culture super-natants were analysed by SDS-PAGE followed by staining with Coomassie blue. As shown in Fig. 2, in the superna-tants of the pTorA-SoXy-containing cells (lanes 3 and 4), a prominent protein band of approximately 44 kDa can be detected, the size of which is very similar to the calculated molecular mass (44.4 kDa) of SoXy. Since this band is completely lacking in the supernatant of the control strain (lane 2), this strongly suggests that this band corresponds to SoXy that has been secreted into the culture supernatant of C. glutamicum (pTorA-SoXy). And, in fact, this suggestion was subsequently confirmed in a direct way by MALDI-TOF mass spectrometry after extraction of the protein out of the gel followed by tryptic digestion (Schaffer etal., 2001) (data not shown).
Next, the supernatant of C. glutamicum (pTorA-SoXy) was analysed for SoXy enzyme activity by measuring the production of H2O2 that is formed during the enzymatic conversion of sorbitol to fructose (Meiattini, 1983). Six hours after induction of gene expression by 1 mM IPTG, an enzymatic activity of 10.3 ± 1.6 nmol min-1 ml-1 could be determined in the supernatant of C. glutamicum (pTorA-SoXy). In contrast, no such activity was found in the supernatant of the control strain C. glutamicum (pEKEx2). From these results we conclude that we have succeeded in the secretion of enzymatically active and therefore FAD cofactor-containing SoXy into the culture supernatant of C. glutamicum.
Finally, we examined whether the secretion of SoXy had in fact occurred via the Tat pathway of C. glutamicum. Plasmid pTorA-SoXy was used to transform C. glutam-cium ATCC13032 wild type and a C. glutamicum DTatAC
Fig. 1. The TorA-SoXy hybrid precursor protein. Upper part: Schematic drawing of the relevant part of the pTorA-SoXy expression vector. Ptac, IPTG-inducible tac promotor. RBS, ribosome binding site. To maintain the authentic TorA signal peptidase cleavage site, the first four amino acids of the mature TorA protein (black bar) were retained in the TorA-SoXy fusion protein. White bar: TorA signal peptide (TorASP); grey bar: SoXy (amino acids 2-418). Lower part: Amino acid sequence of the signal peptide and early mature region of the TorA-SoXy hybrid precursor. The twin-arginine consensus motif of the TorA signal peptide is underlined. The four amino acids derived from mature TorA are shown in italics. The signal peptidase cleavage site is indicated by an arrowhead.
Fig. 2. Secretion of SoXy into the growth medium of C. glutamicum. Cells of C. glutamicum ATCC13032 containing the empty vector pEKEx2 and two independently transformed colonies of C. glutamicum (pTorA-SoXy) were grown overnight in 5 ml of BHI medium (Difco) at 30°C. The cells were washed once with CGXII medium (Keilhauer etal, 1993) and inoculated to an ODeoo of 0.5 in 5 ml of fresh CGXII medium containing 1 mM IPTG. After 16 h of further growth at 30°C, the supernatant fractions were prepared as described previously (Meissner etal, 2007). Samples corresponding to an equal number of cells were subjected to SDS-PAGE followed by staining with Coomassie blue. Lane 1, molecular mass marker (kDa). Lane 2, C. glutamicum (pEKEx2); lanes 3 and 4, C. glutamicum (pTorA-SoXy). The position of the secreted SoXy protein is indicated by an arrow.
mutant strain that lacks two essential components of the Tat transport machinery and therefore does not possess a functional Tat translocase (Meissner etal., 2007). The corresponding cells were grown in BHI medium (Difco) at 30°C in the presence of 1 mM IPTG for 6 h. Subsequently, the proteins present in the cellular and the supernatant fractions of the corresponding cells were analysed by SDS-PAGE followed by Western blotting using SoXy-specific antibodies. As shown in Fig. 3, polypeptides corresponding to the unprocessed TorA-SoXy precursor and some minor smaller degradation products of it can be detected in the cellular fractions of both the wild-type and the DTatAC deletion strains (lanes 3 and 5). In the supernatant fraction of the Tat+ wild-type strain (lane 4), but not that of the DTatAC strain (lane 6), a polypeptide corresponding to mature SoXy is present, clearly showing that export of SoXy in the wild-type strain had occurred in a strictly Tat-dependent manner. Another noteworthy finding is the observation that hardly any mature SoXy protein accumulated in the cellular fraction of the Tat+ wild-type strain (lane 3), indicating that SoXy is, after its Tat-dependent translocation across the cytoplasmic mem-
brane and processing by signal peptidase, rapidly transported out of the intermembrane space across the mycolic acid-containing outer membrane into the supernatant. However, the mechanism of how proteins cross this additional permeability barrier is completely unknown so far (Bitter etal, 2009).
To the best of our knowledge, our results represent the first documented example of the successful secretion of a normally cytosolic, cofactor-containing protein via the Tat pathway in an active form into the culture supernatant of a recombinant expression host. Our results clearly show that, also for this biotechnologically very interesting class of proteins, a secretory production strategy can be a promising alternative to conventional intracellular expression strategies. Besides for SoXy and other FAD-containing carbohydrate oxidases, for which various applications are perceived by industry such as the in situ generation of hydrogen peroxide for bleaching and disinfection performance in technical applications, their use in the food and drink industry, as well as their use in diagnostic applications and carbohydrate biosynthesis processes (Oda and Hiraga, 1998; Murooka and Yamashita, 2001; van Hellemond etal., 2006; Heuts etal., 2007), a secretory production strategy might now be an attractive option also for biotechnologically relevant enzymes that are used as biocatalysts in chemo-enzymatic syntheses and that possess cofactors other than FAD, such as pyridoxal-5'-phosphate (PLP)-dependent w-transaminases (Mathew and Yun, 2012) or
Fig. 3. Transport of TorA-SoXy occurs in a strictly Tat-dependent manner. Plasmid pTorA-SoXy was transformed into C. glutamcium ATCC13032 (Tat+) and a C. glutamicum DTatAC mutant that lacks a functional Tat translocase (Meissner etal, 2007). As a control, the empty pEKEx2 expression vector was transformed into C. glutamicum ATCC13032 (Tat+). The respective strains were grown overnight in 5 ml of BHI medium (Difco) at 30°C. The cells were washed once with BHI and resuspended in 20 ml of fresh BHI medium containing 1 mM IPTG. After 6 h of further growth at 30°C, the cellular (C) and supernatant (S) fractions were prepared as described previously (Meissner etal., 2007). Samples of the C and S fractions were subjected to SDS-PAGE followed by immunoblot-ting using anti-SoXy antibodies as indicated at the top of the figure. Lanes 1 and 2: C. glutamicum ATCC13032 (pEKEx2); lanes 3 and 4: C. glutamicum ATCC13032 (pTorA-SoXy); lanes 5 and 6: C. glutamicum ATatAC (pTorA-SoXy). Asterisk: TorA-SoXy precursor; arrow: secreted SoXy protein. The positions of molecular mass markers (kDa) are indicated at the left margin of the figure.
various thiamin diphosphate (TDP)-dependent enzymes (Müller etal., 2009).
Acknowledgements
This work was supported by the Bundesministerium für Bildung und Forschung (BMBF) project 'Genomic Design - Doubling Efficiency by Microbial Genomic Design' 0313917C. We are very grateful to Melanie Brocker for her help with the MALDI-TOF mass spectrometry experiments and to Astrid Bida for excellent technical assistance.
Conflict of interest
None declared.
References
Becker, J., and Wittmann, C. (2011) Bio-based production of chemicals, materials and fuels - Corynebacterium glutamicum as versatile cell factory. Curr Opin Microbiol 23: 1-10. Billman-Jacobe, H., Wang, L.F., Kortt, A., Stewart, D., and Radford, A. (1995) Expression and secretion of heterologous proteases by Corynebacterium glutamicum. Appl Environ Microbiol 61: 1610-1613. Bitter, W., Houben, E.N.G., Luirink, J., and Appelmelk, B.J. (2009) Type VII secretion in mycobacteria: classification in line with cell envelope structure. Trends Microbiol 17: 337338.
Brüser, T. (2007) The twin-arginine translocation system and its capability for protein secretion in biotechnologi-cal protein production. Appl Microbiol Biotechnol 76: 35-45.
Eikmanns, B.J., Kleinertz, E., Liebl, W., and Sahm, H. (1991) A family of Corynebacterium glutamicum/Escherichia coli shuttle vectors for cloning, controlled gene expression, and promoter probing. Gene 102: 93-98. Forneris, F., Heuts, D.P.H.M., Delvecchio, M., Rovida, S., Fraaije, M.W., and Mattevi, A. (2008) Structural analysis of the catalytic mechanism and stereoselectivity in Strepto-myces coelicolor alditol oxidase. Biochemistry 47: 978985.
Harwood, C.R., and Cranenburgh, R. (2008) Bacillus protein secretion: an unfolding story. Trends Microbiol 16: 73-79. van Hellemond, E.W., Leferink, N.G., Heuts, D., Fraaije, M.W., and van Berkel, W.J. (2006) Occurrence and bio-catalytic potential of carbohydrate oxidases. Adv Appl Microbiol 60: 17-54. Heuts, D.P.H., van Hellemond, E.W., Janssen, D.B., and Fraaije, M.W. (2007) Discovery, characterization, and kinetic analysis of an alditol oxidase from Streptomyces coelicolor. J Biol Chem 282: 20283-20291. Heuts, D.P.H.M., Scrutton, N.S., McIntyre, W.S., and Fraaije, M.W. (2009) What's in a covalent bond? On the role and formation of covalently bound flavin cofactors. FEBSJ276: 3405-3427.
Hoffmann, C., Leis, A., Niederweis, M., Plitzko, J.M., and Engelhardt, H. (2008) Disclosure of the mycobacterial
outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure. Proc Natl Acad Sei USA 105: 3963-3967.
Keilhauer, C., Eggeling, L., and Sahm, H. (1993) Isoleucine synthesis in Corynebacterium glutamicum: molecular analysis of the ilvB-ilvN-ilvCoperon. J Bacteriol 175: 55955603.
Kikuchi, Y., Itaya, H., Date, M., Matsui, K., and Wu, L.-F. (2009) TatABC overexpression improves Corynebacterium glutamicum Tat-dependent protein secretion. Appl Environ Microbiol 75: 603-607.
Leuchtenberger, W., Huthmacher, K., and Drauz, K. (2005) Biotechnological production of amino acids and derivatives: current status and prospects. Appl Microbiol Biotechnol 69: 1-8.
Li, W., Zhou, X., and Lu, P. (2004) Bottlenecks in the expression and secretion of heterologous proteins in Bacillus subtilis. Res Microbiol 155: 605-610.
Litsanov, B., Kabus, A., Brocker, M., and Bott, M. (2012) Efficient aerobic succinate production from glucose in minimal medium with Corynebacterium glutamicum. Microb Biotechnol 5: 116-128.
Mathew, S., and Yun, H. (2012) w-Transaminases for the production of optically pure amines and unnatural amino acids. ACS Catal 2: 993-1001.
Meiattini, F. (1983) Inorganic peroxides. In Methods of Enzymatic Analysis, 3rd Edn, Vol. 7. Metabolites 2: Tri- and Dicarboxylic Acids. Purines, Pyrimidines and Derivatives, Coenzymes, Inorganic Compounds. Bergmeyer, H.U., Bergmeyer, J., and Graßl, M. (eds). Weinheim, Germany: Verlag Chemie, pp. 566-571.
Meissner, D., Vollstedt, A., van Dijl, J.M., and Freudl, R. (2007) Comparative analysis of twin-arginine (Tat)-dependent protein secretion of a heterologous model protein (GFP) in three different Gram-positive bacteria. Appl Microbiol Biotechnol 76: 633-642.
Müller, M., Gocke, D., and Pohl, M. (2009) Thiamin diphos-phate in biological chemistry: exploitation of diverse thiamin diphosphate-dependent enzymes for asymmetric chemoenzymatic synthesis. FEBS J 276: 2894-2904.
Murooka, Y., and Yamashita, M. (2001) Genetic and protein engineering of diagnostic enzymes, cholesterol oxidase and xylitol oxidase. J Biosci Bioeng 91: 433-441.
Oda, K., and Hiraga, K. (1998) Sorbitol oxidase from microorganisms. Ann N YAcad Sci 864: 454-457.
du Plessis, D.J., Nouwen, N., and Driessen, A.J.M. (2011)The Sec translocase. Biochim Biophys Acta 1808: 851-865.
Quax, W.J. (1997) Merits of secretion of heterologous proteins from industrial microorganisms. Folia Microbiol 42: 99-103.
Sarvas, M., Harwood, C.R., Bron, S., and van Dijl, J.M. (2004) Post-translocational folding of secretory proteins in Grampositive bacteria. Biochim Biophys Acta 1694: 311-327.
Schaffer, S., Weil, B., Nguyen, V.D., Dongmann, G., Günther, K., Nickolaus, M., etal. (2001) A high-resolution reference map for cytoplasmic and membrane-associated proteins of Corynebacterium glutamicum. Electrophoresis 22: 44044422.
Tateno, T., Okada, Y., Tshuchidate, T., Tanaka, T., Fukuda, H., and Kondo, A. (2009) Direct production of cadaverine from soluble starch using Corynebacterium glutamicum
coexpressing alpha-amylase and lysine decarboxylase. Appl Microbiol Biotechnol 82: 115-121. Teramoto, H., Watanabe, K., Suzuki, N., Inui, M., and Yukawa, H. (2011) High yield secretion of heterologous proteins in Corynebacterium glutamicum using its own Tat-type signal sequence. Appl Microbiol Biotechnol 91: 677-687.
Tsuchidate, T., Tateno, T., Okai, N., Tanaka, T., Ogino, C., and Kondo, A. (2011) Glutamate production from ß-glucan using endoglucanase-secreting Corynebacterium glutamicum. Appl Microbiol Biotechnol 90: 895-901.
Westers, L., Westers, H., and Quax, W.J. (2004) Bacillus subtilis as cell factory for pharmaceutical proteins: a bio-technological approach to optimize the host organism. Biochim BiophysActa 1694: 299-310.
Yuan, J., Zweers, J.C., van Dijl, J.M., and Dalbey, R.E. (2010) Protein transport across and into cell membranes in bacteria and archaea. Cell Mol Life Sci 67: 179-199.
Zuber, B., Chami, M., Houssin, C., Dubochet, J., Griffiths, G., and Daffe, M. (2008) Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state. J Bacteriol 190: 5672-5680.