Scholarly article on topic 'RAB-6.2 and the retromer regulate glutamate receptor recycling through a retrograde pathway'

RAB-6.2 and the retromer regulate glutamate receptor recycling through a retrograde pathway Academic research paper on "Biological sciences"

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Academic research paper on topic "RAB-6.2 and the retromer regulate glutamate receptor recycling through a retrograde pathway"

RAB-6.2 and the retromer regulate glutamate receptor recycling through a retrograde pathway

Donglei Zhang,1 Nora R. isack,1 Doreen R. Giodowski,1 Jie Liu,3 Carlos Chih-Hsiung Chen,1,2 X.Z. Shawn Xu,3 Barth D. Grant,2 and Christopher Rongo1

'The Waksman Institute, Department of Genetics; and 2Department of Molecular Biology and Biochemistry; Rutgers, The State University of New Jersey, Piscataway, NJ 08854

3The Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109

Regulated membrane trafficking of AMPA-type glutamate receptors (AMPARs) is a key mechanism underlying synaptic plasticity, yet the pathways used by AMPARs are not well understood. In this paper, we show that the AMPAR subunit GLR-1 in Caenorhabdi-tis elegans utilizes the retrograde transport pathway to regulate AMPAR synaptic abundance. Mutants for rab-6.2, the retromer genes vps-35 and snx-1, and rme-8 failed to recycle GLR-1 receptors, resulting in GLR-1 turnover and behavioral defects indicative of diminished GLR-1 function. In contrast, expression of constitutively

active RAB-6.2 drove the retrograde transport of GLR-1 from dendrites back to cell body Golgi. We also find that activated RAB-6.2 bound to and colocalized with the PDZ/phosphotyrosine binding domain protein LIN-10. RAB-6.2 recruited LIN-10. Moreover, the regulation of GLR-1 transport by RAB-6.2 required LIN-10 activity. Our results demonstrate a novel role for RAB-6.2, its effector LIN-10, and the retromer complex in maintaining synaptic strength by recycling AMPARs along the retrograde transport pathway.

Introduction

AMPA-type glutamate receptors (AMPARs) mediate much of the excitatory postsynaptic response at central nervous system synapses, and the regulated trafficking of AMPARs is a pivotal mechanism by which neurons regulate synaptic strength at excitatory synapses (Shepherd and Huganir, 2007; Henley et al., 2011). Once endocytosed into early endosomes, AMPARs can be sorted either into recycling pathways, which send them back to the plasma membrane, or into degradation pathways, which send them to the lysosome via multivesicular bodies (MVBs) and late endosomes. Recycling of previously endocytosed AMPARs from endosomal pools can occur through recycling endosomes (Gerges et al., 2004; Park et al., 2004; Hanley, 2010). Such regulated recycling is important for long-term potentiation, long-term depression, and homeostatic plasticity (Turrigiano, 2008; Kessels and Malinow, 2009; Makino and Malinow, 2009). Given the complex cell biological organization of the neuron,

Correspondence to Christopher Rongo: rongo@waksman.rutgers.edu

Abbreviations used in this paper: AD, Alzheimer's disease; AMPAR, AMPA-type glutamate receptor; ANOVA, analysis of variance; APP, amyloid precursor protein; ESCRT, endosomal sorting complex required for transport; MANS, man-nosidase; mRFP, monomeric RFP; MVB, multivesicular body; NGM, nematode growth media; PTB, phosphotyrosine binding.

The Rockefeller University Press $30.00 J. Cell Biol. Vol. 196 No. 1 85-101 www.jcb.org/cgi/doi/10.1083/jcb.201104141

it is likely that additional trafficking mechanisms determine AMPAR abundance and composition at the synapse.

Recycling also occurs through retrograde transport from early endosomes back to the Golgi followed by exit from the Golgi to the plasma membrane. The retrograde pathway is particularly important for the retrieval of Golgi residents, signaling molecule chaperones, and membrane receptors, and the pathway can also be subjugated by pathogens and their toxins (Bonifacino and Rojas, 2006; Bonifacino and Hurley, 2008; Johannes and Popoff, 2008; Pan et al., 2008; Lieu and Gleeson, 2011; Pfeffer, 2011). Surprisingly, little is known about retrograde transport in neurons, and it remains unknown whether synaptic proteins or neurotransmitter receptors, such as AMPARs, use the retrograde pathway.

Retrograde transport is mediated by the retromer complex, which is comprised of sorting nexins (Vps5-SNX1/2) and the VPS26-VPS29-VPS35 subcomplex (Bonifacino and Rojas, 2006; Bonifacino and Hurley, 2008; Johannes and Popoff, 2008). The retromer is found on long tubules that extend from the early

© 2012 Zhang et al. This article is distributed under the terms of an Attribution-Noncommercial-Share Alike-No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution-Noncommercial-Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

Supplemental Material can be found at:

http://jcb.rupress.org/content/suppl/2011/12/29/jcb.201104141.DC1.html

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endosome, where it shunts cargo away from the endosomal sorting complex required for transport (ESCRT) on the limiting membrane (Arighi et al., 2004; Carlton et al., 2004; Rojas et al., 2007). In the absence of retromer function, retrograde cargo is inadvertently sent down the degradation pathway by the ESCRT complex via MVBs (Arighi et al., 2004; Carlton et al., 2004). Members of the Rab6 small GTPase family of proteins also regulate retrograde transport, yet how the function of the Rab6 GTPases is integrated with that of the retromer is unclear (Echard et al., 2000; Mallard et al., 2002; Del Nery et al., 2006). A role for the retromer in AMPAR trafficking has not been described.

AMPARs also undergo regulated trafficking in the inter-neurons of Caenorhabditis elegans. C. elegans AMPARs are comprised of two subunits, GLR-1 and GLR-2, which function in the command interneurons where they transduce synaptic input from nose-touch mechanosensory neurons and govern overall locomotory behavior (Hart et al., 1995; Maricq et al., 1995; Mellem et al., 2002; Chang and Rongo, 2005). GLR-1 and GLR-2 AMPARs also promote spontaneous reversals in the direction of locomotion (Zheng et al., 1999). Mutants that lack AMPAR function or fail to transport and maintain AMPARs at synapses have reduced nose-touch mechanosensitivity and exhibit a depressed frequency of spontaneous reversals; thus, these behaviors correlate with AMPAR synaptic abundance (Burbea et al., 2002; Shim et al., 2004; Glodowski et al., 2005). Previous genetic approaches have identified the Rab-type small GTPases RAB-5, UNC-108/RAB-2, and RAB-10 as key regulators of AMPAR trafficking in C. elegans (Glodowski et al., 2007; Chun et al., 2008; Park et al., 2009), raising the possibility that GLR-1 AMPARs are regulated by additional Rabs.

To understand how neurons regulate AMPAR recycling, we tested different candidate C. elegans Rabs for their ability to regulate GLR-1 trafficking. Here, we show that RAB-6.2, together with the retromer complex, promotes the retrograde recycling of GLR-1-containing AMPARs. We show that rab-6.2 mutants display defects in GLR-1 localization and behavior consistent with defects in retrograde transport. We show that RAB-6.2 is colocalized with LIN-10, a member of the Mint/ X11 family (Whitfield et al., 1999; Glodowski et al., 2007), regulating GLR-1 retrograde transport through this interaction. We propose that neurons use the retrograde transport pathway to regulate the synaptic abundance of neurotransmitter receptors and that the Mint family of proteins is part of the retrograde transport machinery.

Results

RAB-6.2 regulates GLR-1 trafficking

To screen through multiple Rabs for candidates that regulate GLR-1 trafficking, we generated transgenes that express dominant-negative GDP-locked versions of Rabs while restricting their expression to postembryonic command interneurons by using the glr-1 promoter. The trafficking of GLR-1 can be monitored using the nuIs25[glr-1::gfp] transgenic strain, which expresses a rescuing GLR-1::GFP chimeric receptor that is localized to the postsynaptic face of synapses (Rongo et al., 1998; Burbea et al., 2002). Individual GLR-1::GFP-containing synapses

can be observed as small (0.5-0.7 |im) puncta along the ventral cord dendrites in wild-type young adult animals (Fig. 1 B). Expression of a GDP-locked version of one of the Rabs we tested, rab-6.2, resulted in a dramatic decrease in the number and fluorescence intensity of GLR-1::GFP puncta compared with wild type (Fig. 1 C and not depicted). We obtained a mutant for the rab-6.2 gene, rab-6.2(ok2254), that contains a deletion of rab-6.2 sequences, including the promoter, both "switch" domains, and the GTPase catalytic core, resulting in a likely molecular null (Fig. 1 A). We observed a significant decrease in the number and fluorescent intensity of GLR-1 puncta along the ventral cord dendrites of rab-6.2(ok2254) mutants (Fig. 1, D-F; and Fig. S1 A), indicating that RAB-6.2 is required for proper GLR-1 localization. We also examined the localization of a presynaptic protein, SNB-1 (synaptobrevin; Nonet et al., 1998) and observed no difference in GFP-labeled SNB-1 puncta in mutants compared with wild type (Fig. 1 E and Fig. S2, A and B), indicating that the defects in GLR-1 subcellular localization are not caused by gross defects in synapse formation along GLR-1-expressing interneurons.

GLR-1 can form either homomeric channels or hetero-meric channels with GLR-2 (Mellem et al., 2002; Shim et al., 2004; Chang and Rongo, 2005; Emtage et al., 2009). We introduced a transgene expressing GFP::GLR-2 (Mellem et al., 2002) into rab-6.2 mutants and found a similar number and intensity of ventral cord puncta compared with wild type (Fig. 1 E, Fig. S1 B, and Fig. S2, C and D). GLR-1 can also associate with the coreceptor STG-1 (Stargazin) and the CUB domain protein SOL-1 (Zheng et al., 1999; Wang et al., 2008). We examined STG-1::GFP and SOL-1::GFP in rab-6.2 mutants and found their pattern of localization to be similar to that of wild type (Fig. S2, G-J). CNIH-2 (cornichon homologue 2) associates with mammalian AMPARs, modulating their gating properties (Schwenk et al., 2009; Kato et al., 2010; Shi et al., 2010). We thus generated a transgene, Pglr-1::cmh-2::gjp, containing C. el-egans CNIH-2 sequences fused to GFP and driven by the glr-1 promoter. We found that CNIH-2::GFP is localized to puncta along ventral cord dendrites (Fig. S1 C and Fig. S2, E and F), although at a lower number in rab-6.2 mutants compared with wild type (Fig. 1 E). These results suggest that the function of RAB-6.2 is biased toward regulating the trafficking of GLR-1 homomeric channels and some, but not all, of the cofactors known to associate with C. elegans AMPARs.

A decrease in synaptic GLR-1::GFP should result in a decrease in GLR-1 function. We found that both the spontaneous reversal rate (Fig. 1 G) and the mechanosensitivity (Fig. 1 H) of rab-6.2 mutants was significantly lower than that in wild type, indicating that a loss of endogenous GLR-1 function accompanies the drop in synaptic GLR-1 in these mutants. We also directly tested whether RAB-6.2 can influence endogenous GLR-1 channel activity. Glutamate-activated currents can be recorded from the interneuron AVA in whole-cell configuration (Mellem et al., 2002). We measured GLR- 1-mediated currents elicited by the application of 1 mM glutamate (Ward et al., 2008), and we found that there was a significant reduction in current amplitude in rab-6.2 mutants versus wild type when AVA was voltage clamped at —70 mV (Fig. 1 I and Fig. S1 D). The current-voltage

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Figure 1. RAB-6.2 regulates GLR-1 trafficking. (A) Gene organization for rab-6.2. Gray boxes show exons. Brackets indicate regions encoding the indicated protein domains. The green line shows genomic DNA deleted in the ok2254 mutant. (B-D) GLR-1:: GFP fluorescence along dendrites of wild type (B), rab-6.2(GDPj-expressing mutants (C), and rab-6.2(ok2254j mutants (D). (E) Mean density of fluorescent puncta for the given reporter. (F) Mean fluorescent intensity of individual puncta. Rescue indicates animals that express a Venus::RAB-6.2 fusion protein via the glr-1 promoter. (G) Mean spontaneous reversal frequency. (H) Mean nose-touch mechanosen-sory response. (I) Example of inward currents induced by glutamate application (bars) for a wild-type neuron and a rab-6.2(ok2254j mutant neuron. Bars, 5 pm. Error bars are SEM. n = 15-35 animals. Analysis of variance (ANOVA) with Dunnett's multiple comparison to wild type (###, P < 0.001) or Bonferroni multiple comparison test (*, P < 0.05; ***, P < 0.001). AU, arbitrary unit.

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relationship in neurons from wild-type animals and rab-6.2 mutants did not differ, indicating that rab-6.2 mutants do not have general defects in conductance (Fig. S1, E-G).

RAB-6.2 regulates GLR-1 cell autonomously

To determine the expression pattern of RAB-6.2, we generated transgenes containing rab-6.2 genomic sequences (including 2 kb

of upstream promoter sequences, the complete ORF, and in-trons) fused in frame to GFP sequences. We introduced this rab-6.2::gfp transgene into nematodes and found that RAB-6.2::GFP is highly expressed in body wall muscles, pharyngeal and vulval muscles, hypodermis, intestine, the gonad, coelomo-cytes, and neurons (Fig. 2, A-I). We also introduced this transgene into nematodes that also express a Pgir-¡::monomeric RFP (mRFP) transgene (Shim et al., 2004), and we found that

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Figure 2. RAB-6.2 is broadly expressed in multiple tissues. (A-I) Fluorescence from Prat-62::GFP in body wall muscles (A), pharyngeal muscle and head neurons (B), hypodermal cells (C), the seam cells (D), intestinal epithelia (E), coelomocytes (F), vulval epithelia (G), the distal tip cells (H), and the vulval muscles and ventral cord dendrites (I). (J-J") Fluorescence from Prab-6.2::GFP (J) and Pgir_1::mRFP (J') with images merged (J"). Coexpressing neurons are outlined. Bars, 5 pm.

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RAB-6.2::GFP is expressed in the GLR-1-expressing command interneurons (Fig. 2 J).

To confirm that the rab-6.2 gene is responsible for the mutant phenotypes and to test for the cell-autonomous function of RAB-6.2, we generated a transgene containing glr-1 promoter sequences fused to rab-6.2 cDNA sequences, with an N-terminal Venus to allow us to monitor expression and subcellular localization. We introduced this Pg¡r.¡::venus::rab-6.2 transgene into wildtype animals and rab-6.2 mutants, both of which express GLR-1:: CFP (Chang and Rongo, 2005). We found that Pglr-1::venus::rab-6.2 completely rescued the defects in both GLR-1::CFP puncta number and puncta fluorescence intensity (Fig. 1, E and F) as well as the spontaneous reversal and mechanosensitivity defects (Fig. 1, G and H), indicating that RAB-6.2 functions cell autonomously.

RAB-6.2 regulates GLR-1 trafficking at a step after endocytosis

One explanation for the decrease in GLR-1::GFP puncta observed in rab-6.2 mutants is that RAB-6.2 facilitates the retrograde

transport of previously endocytosed GLR-1 receptors and that, in the absence of RAB-6.2 activity, these receptors are trafficked for degradation. We tested this model by determining whether endocytosis is required for the receptor turnover that we observe in rab-6.2 mutants, as mutations that block GLR-1 endocytosis should suppress rab-6.2. The clathrin adaptin AP180 orthologue UNC-11 is a key mediator of GLR-1 endo-cytosis, and loss-of-function mutations in unc-11 suppress the turnover and/or internal accumulation of receptors observed in membrane-recycling mutants (Nonet et al., 1999; Burbea et al., 2002). We analyzed GLR-1::GFP localization in rab-6.2; unc-11 double mutants and found that mutations in unc-11 prevent the decrease in GLR-1::GFP puncta number and fluorescence intensity observed in rab-6.2 mutants (Fig. 3, A, B, and E; and Fig. S1 A). GLR-1 endocytosis is also facilitated by the direct ubiquitination of four key lysine residues on the C-terminal tail sequences of the receptor itself (Burbea et al., 2002). The nuIs108[Pgir-1::glr-1(4kr)::gjp] transgene expresses a GLR-1:: GFP in which the ubiquitinated lysines are mutated to arginines,

Figure 3. RAB-6.2 functions downstream of GLR-1 endocytosis. (A and B) GLR-1::GFP fluorescence in unc-ll(e47j (A) and rab-6.2(ok2254); unc-ll(e47j (B) mutants. (C and D) The fluorescence of GLR-1(4KR)::GFP in wild type (C) and rab-6.2(ok2254) mutants (D). (E) Mean fluorescent intensity (AU, arbitrary units) of puncta for the given reporter. (F) Mean nose-touch response. Bars, 5 pm. Error bars are SEM. n = 15-35 animals. ANOVA with Dunnett's multiple comparison to wild type (###, P < 0.001) or rab-6.2(ok2254) mutants expressing GLR-1::GFP (***, P < 0.001).

thereby precluding ubiquitination and depressing receptor endocytosis and turnover. Unlike for wild-type GLR-1::GFP, GLR-1(4KR)::GFP puncta number and fluorescence intensity is not altered in rab-6.2 mutants compared with wild type (Fig. 3, C-E; and Fig. S1 A). Moreover, expression of GLR-1(4KR):: GFP, but not wild-type GLR-1::GFP, restored mechanosensi-tivity to rab-6.2 mutants (Fig. 3 F). Our results indicate that clathrin-mediated endocytosis and receptor ubiquitination are required for the turnover of the GLR-1 receptor and loss of GLR-1 synaptic function observed in rab-6.2 mutants, suggesting that RAB-6.2 regulates GLR-1 trafficking at a step after endocytosis and receptor ubiquitination.

RAB-6.2 regulates the exit of GLR-1 from endosomes and GLR-1 turnover

The increase in GLR-1::GFP turnover observed in rab-6.2 mutants suggested that GLR-1 might be improperly sorted from early endosomes to MVBs, late endosomes, and eventually lysosomes via ESCRT-mediated transport. We tested this possibility by blocking ESCRT-mediated transport in rab-6.2 mutants and observing whether GLR-1 would accumulate in endosomes. The VPS-4 AAA ATPase facilitates the movement of endocytosed cargo from early endosomes to MVBs, and expression of a dominant-negative VPS-4 mutant protein can significantly reduce trafficking from early endosomes to MVBs

and the late endosome (Babst et al., 2002; Yeo et al., 2003). Neuronal expression of dominant-negative VPS-4 from the transgene nuIs145[Pglr-1::vps-4(dn)] blocks the movement of GLR-1 receptors from early endosomes to MVBs and decreases their ubiquitin-mediated turnover (Chun et al., 2008). We found that expression of dominant-negative VPS-4 in rab-6.2 mutants restored GLR-1::GFP puncta number and fluorescence intensity to wild-type levels (Fig. 4, A-C; and Fig. S1 A), indicating that the ESCRT pathway is required for GLR-1 turnover when retrograde transport is blocked. Consistent with this model, we detected lower levels of GLR-1 in rab-6.2 mutants by Western blotting in whole-nematode lysates (Fig. 4 F).

If the pathways for retrograde recycling and transport to MVBs are both blocked, GLR-1 should eventually accumulate in early endosomes and thus decrease synaptic GLR-1 function. We therefore measured the spontaneous reversal rate and mechanosen-sitivity of rab-6.2 mutants compared with rab-6.2 mutants that also express dominant-negative VPS-4. Although dominant-negative VPS-4 can prevent GLR-1 turnover, it cannot restore either the decreased frequency in reversal rates (Fig. 4 D) or the decreased mechanosensitivity (Fig. 4 E) observed in rab-6.2 mutants, suggesting that the GLR-1 receptors in rab-6.2 nuIs145[Pglr-1::vps-4(dn)] animals are not accumulating at synaptic sites.

To determine the specific site of GLR-1 accumulation in these animals, we used the endosomal markers SYN-13

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Figure 4. RAB-6.2 regulates the exit of GLR-1 from endosomes. (A and B) GLR-1:: GFP fluorescence in dendrites of vps-4(dn) (A) and rab-6.2(ok2254); vps-4(dn) (B) mutants. (C-E) Mean fluorescent intensity of GLR-1 puncta (C), spontaneous reversal frequency (D), and nose-touch response for the indicated genotypes (E). (F) Total GLR-1 protein levels, normalized to actin, as detected in four independent Western blots. (G-I'") GLR-1::GFP (G-I) and mRFP::SYN-13 (G'-I') fluorescence in neuron cell bodies from wild type (G-G'''), rab-6.2(ok2254) (H-H'''), and rab-6.2(ok2254); vps-4(dn) (I-I''') mutants. (G''-I'') Merged images. (G'''-I''') Binary masks indicate colo-calization by highlighting pixels with matching intensity values. (J) Mean percentage of GLR-1:: GFP colocalized with endosomal marker mRFP::SYN-1 3, normalized to total GLR-1:: GFP in cell bodies. (K-M'') GLR-1::CFP (K-M) and Venus::RAB-5 (K'-M') fluorescence along ventral cord dendrites from wild type (K-K''), rab-6.2(ok2254) (L-L''), and rab-6.2(ok2254); vps-4(dn) (M-M'') mutants. (K''-M'') Merged images. Arrowheads indicate colocalized puncta. Bars, 5 pm. Error bars are SEM. n = 15-35. ANOVA with Dunnett's multiple comparison to wild type (###, P < 0.001; #, P < 0.05) or Bonferroni multiple comparison test (***, P < 0.001). AU, arbitrary unit.

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(syntaxin 13) and RAB-5. We observed mRFP::SYN-13 and GLR-1::GFP colocalization in neuron cell bodies as previously described (Chun et al., 2008; Park et al., 2009). We coexpressed mRFP::SYN-13 with GLR-1::GFP in both rab-6.2 and rab-6.2 nuIs145[Pglr-1::vps-4(dn)] animals. Although we did not see a significant change in the amount of GLR-1::GFP colocalized with mRFP::SYN-13 puncta in rab-6.2 mutants (^30%; Fig. 4, G, H, and J), we found that the mRFP::SYN-13-labeled structures are increased in size, with nearly 70% of GLR-1::GFP colocalized, in rab-6.2 mutants when MVB trafficking is blocked by dominant-negative VPS-4 (Fig. 4, I and J). We also coexpressed GLR-1::CFP with Venus::RAB-5 in both rab-6.2 and rab-6.2 nuIs145[Pglr-1::vps-4(dn)] animals. In wild-type

animals, Venus::RAB-5 is localized to a small number of puncta along the ventral cord dendrites, and a small number of GLR-1::CFP puncta colocalized with these Venus::RAB-5 puncta (Fig. 4 K). In rab-6.2 mutants, Venus::RAB-5 becomes distributed throughout the dendrites, consistent with an enlargement of early endosomes caused by arrested retrograde transport (Fig. 4 L). The remaining GLR-1: :CFP in rab-6.2 mutants is colocalized with Venus::RAB-5, and this colocalization is also observed when MVB trafficking is blocked by dominant-negative VPS-4 (Fig. 4, L and M). Collectively, these results indicate that RAB-6.2 regulates the exit of endocytosed GLR-1 receptors out of early endosomes in neurons.

RAB-6.2 associates with GLR-1 and Golgi

To examine RAB-6.2 subcellular localization, we generated transgenes containing the glr-1 promoter sequences fused to sequences encoding GFP, Cerulean, or Venus fused in frame to the N-terminal sequences of RAB-6.2. We found that RAB-6.2 is localized to punctate structures in the neuron cell body and along the ventral cord dendrites. We introduced the Pg¡r.¡::cerulean:: rab-6.2 transgene into nematodes that express the Golgi resident protein mannosidase (MANS)::YFP (Rolls et al., 2002; Glodowski et al., 2005) and observed nearly complete colocalization between Cerulean::RAB-6.2 and MANS::YFP, indicating that RAB-6.2 is localized on or near Golgi structures (Fig. 5 A). We introduced the Pg¡r.¡::venus::rab-6.2 transgene into nematodes expressing GLR-1::CFP, and we found that GLR-1::CFP and Venus::RAB-6.2 are colocalized at or near individual puncta in both the cell body (Fig. 5 B) and the ventral cord dendrites (Fig. 5 C). Our results indicate that a minority of RAB-6.2 and GLR-1 puncta are colocalized, consistent for a cargo molecule and a specific Rab GTPase regulator of its trafficking.

To test whether a guanine nucleotide-bound state regulates RAB-6.2 subcellular localization, we introduced either GDP-locking (RAB-6.2(GDP), mutation T24N) or GTP-locking (RAB-6.2(GTP), mutation Q69L) mutations into the GFP-tagged transgene. Whereas wild-type GFP::RAB-6.2 is found in puncta along dendrites (Fig. 5 D), GFP::RAB-6.2(GDP) was diffusely distributed in the dendrites and cell body cytosol (Fig. 5 E and not depicted). In contrast, we found GFP::RAB-6.2(GTP) in a punctate pattern, with higher levels of punctate fluorescence intensity than those observed for the wild-type GFP::RAB-6.2 protein (Fig. 5 F). Thus, activation of RAB-6.2 by GTP binding results in its punctate localization.

RAB-6.2 can drive GLR-1 retrograde transport back to soma Golgi

To test whether the activation of RAB-6.2 has an instructive role in directing GLR-1 retrograde transport, we generated Pgir-1::rab-6.2(gtp), a transgene that expresses GTPase-defective, constitutively active RAB-6.2 via the glr-1 promoter. Expression of RAB-6.2(GTP) resulted in the accumulation of few GLR-1::GFP ventral cord puncta and, instead, resulted in the accumulation in several large puncta in the neuron cell bodies (Fig. 6, A-D, I, and J). We examined GLR-1::GFP in animals that express RAB-6.2(GTP) and are also blocked for endocytosis. We found that both the decrease in GLR-1 ventral cord puncta and the accumulation of GLR-1 in large cell body puncta caused by RAB-6.2(GTP) are prevented in unc-11 mutants (Fig. 6, E-J). Similarly, GLR(4KR)::GFP puncta levels remain steady in the dendrites of animals expressing RAB-6.2(GTP) (Fig. 6 J; and Fig. S1 A). Moreover, coexpres-sion of dominant-negative VPS-4 does not suppress the decrease in dendritic GLR-1 or the accumulation of GLR-1 in the cell body in animals expressing RAB-6.2(GTP) (Fig. S1 A and not depicted). Thus, RAB-6.2(GTP) promotes the retrograde redistribution rather than the turnover of previously endocytosed GLR-1 receptors.

If RAB-6.2(GTP) is driving GLR-1 out of synapses, we would expect a reduction in GLR-1 function. We therefore

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measured the spontaneous reversal rate and mechanosensitivity of animals expressing RAB-6.2(GTP) and found that both behaviors were reduced (Fig. 6 K and not depicted). To determine the site of GLR-1 accumulation in the cell body, we expressed RAB-6.2(GTP) in odIs25[Pg[r-1::glr-1::cfp] transgenic animals that also express MANS::YFP, which resides in the Golgi (Rolls et al., 2002; Shim et al., 2004). In wild-type cell bodies, little GLR-1::CFP is colocalized with MANS::YFP (Fig. 6 L).

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Figure 6. RAB-6.2 drives GLR-1::GFP into Golgi. (A-H) GLR-1::GFP in wild type (A and B), rab-6.2(GTPj-expressing transgenic animals (C and D), unc-ll(e47j mutants (E and F), and rab-6.2(GTPj; unc-ll(e47j double mutants (G and H). Arrows indicate punctate GLR-1 accumulation in the cell body. (I-K) The mean integrated fluorescent intensity for individual PVC cell bodies (I), fluorescent intensity of GLR-1 fluorescent puncta (J), and nose-touch mechanosensitivity (K). (L-M") GLR-1::CFP (L and M) and MANS::YFP (L' and M') fluorescence in cell bodies (PVC shown) for wild-type animals (L-L") and animals expressing rab-6.2(GTPj (M-M''). Bars, 5 pm. ANOVA with Dunnett's multiple comparison to wild type (", P < 0.01; ###, P < 0.001) or rab-6.2(GTPj mutants expressing GLR-1::GFP (***, P < 0.001). Error bars are SEM. AU, arbitrary unit.

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In contrast, expression of RAB-6.2(GTP) drives GLR-1::CFP into MANS::YFP-decorated Golgi (Fig. 6 M).

Activated RAB-6.2 interacts with LIN-10

One possible effector target of RAB-6.2 could be LIN-10, a PDZ/phosphotyrosine binding (PTB) scaffolding molecule that regulates GLR-1 recycling (Glodowski et al., 2007; Park et al., 2009). The PTB domain of Mint3, a mammalian LIN-10 homologue, can directly bind to mammalian Rab6 (Teber et al., 2005; Thyrock et al., 2010). We therefore tested whether LIN-10 PTB domain bait and various C. elegans candidate Rab prey could interact by yeast two-hybrid assay. We tested 19 different Rab preys and found an interaction for RAB-6.1 and RAB-6.2, members of the Rab6 subfamily (Fig. S3).

To confirm the physical interaction between the LIN-10 PTB domain and RAB-6.2, we expressed either GST or GST::LIN-10(PTB), which contains GST plus 207 amino acids

containing the LIN-10 PTB domain in bacteria and then tested the ability of these proteins when bound to glutathione agarose beads to pull down in vitro translated HA-tagged RAB-6.2 protein. We also tested the ability of GST::LIN-10(PTB) to interact with mutant RAB-6.2 protein locked in either its GTP-bound or GDP-bound state. GST alone could not pull down HA::RAB-6.2 protein (Fig. 7 A). However, GST::LIN-10(PTB) could specifically pull down HA::RAB-6.2(GTP) but not HA::RAB-6.2(GDP) (Fig. 7 A). We also expressed either GST alone, GST::RAB-6.2(GDP), or GST::RAB-6.2(GTP) in bacteria and then tested the ability of these proteins to pull down an in vitro translated HA-tagged LIN-10 PTB domain. We found that GST::RAB-6(GTP), but not GST or GST::RAB-6(GDP), specifically pulled down HA::LIN-10(PTB) (Fig. 7 B). Thus, activated RAB-6.2 can physically bind to LIN-10.

We next introduced the Pglr-1::venus::rab-6.2 transgene into animals that express a LIN-10::CFP chimeric protein to

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Figure 7. RAB-6.2 binds to and is colocalized with LIN-10. (A) Pull-down experiments using GST:: LIN-10(PTB) or GST alone incubated with in vitro translated fusion proteins HA::RAB-6.2(GDP) or HA::RAB-6.2(GTP). (B) Pull-downs using GST::RAB-6.2(GDP), GST::RAB-6.2(GTP), or GST alone incubated with in vitro translated fusion protein HA:: LIN-10(PTB). 10% of input was loaded as a control. (C-D') LIN-10::CFP (C and D) and Venus::RAB-6.2 (C' and D') in neurons. (C'' and D'') Colocalization of LIN-10::CFP and Venus::RAB-6.2 was detected in both PVC cell bodies (C'', arrowheads) and ventral cord dendrites (D'', arrowheads). Bars, 5 pm. WB, Western blot.

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determine where in neurons this physical interaction occurs. LIN-10 is localized to Golgi structures in neuron cell bodies and punctate structures along ventral cord dendrites (Glodowski et al., 2005). We found that Venus::RAB-6.2 is colocalized with LIN-10::CFP in neuron cell bodies (Fig. 7 C). Along dendrites, Venus::RAB-6.2 is colocalized adjacent to sites of LIN-10 localization (Fig. 7 D), indicating that these two proteins are found at related subcellular compartments within neurons.

Both LIN-10 and RAB-6.2 are broadly expressed in multiple tissues, including the intestine (Fig. 2; Whitfield et al., 1999). C. elegans intestinal cells are polarized epithelial cells that are well suited for subcellular trafficking experiments (Grant and Sato, 2006). To examine LIN-10 and RAB-6.2 in epithelial cells, we generated transgenes containing the vha-6 intestine-specific promoter sequences driving sequences encoding GFP, tagRFP, or mCherry fused in frame to the complete RAB-6.2, MANS, or LIN-10 reading frame sequences. Both LIN-10::GFP and tagRFP::RAB-6.2 proteins were localized to punctate structures in the intestinal cytosol (Fig. S4 A). Similarly, both GFP::RAB-6.2 and MANS::mCherry were completely colocalized (Fig. S4 B). Finally, we found that LIN-10::GFP and MANS::mCherry were localized adjacent

to one another in the intestine (Fig. S4 C). Collectively, our results suggest that RAB-6.2 is localized tightly to MANS-containing Golgi structures and that LIN-10 is localized to adjacent Golgi-associated structures.

LIN-1 O is an effector of RAB-6.2

To test whether LIN-10 is a RAB-6.2 effector, we first examined whether RAB-6.2 acted to recruit LIN-10 by introducing the odIs22[Pg¡r.¡::lin-10::GFP] transgene into rab-6.2 mutants. Although LIN-10::GFP is punctate in wild type (Fig. 8 A), it is diffusely distributed in the cytosol of rab-6.2 mutants (Fig. 8 B). We next introduced transgenes expressing either RAB-6.2(GDP) or RAB-6.2(GTP) into odIs22 animals. Like in rab-6.2 mutants, LIN-10::GFP is not localized to puncta when RAB-6.2(GDP) is expressed (Fig. 8 C). In contrast, expression of RAB-6.2(GTP) drove LIN-10::GFP into a more punctate localization pattern (Fig. 8 D), suggesting that the activation of RAB-6.2 regulates LIN-10 subcellular localization. Using fluorescence density thresholding (Umemura et al., 2005), we were able to approximate the relative levels of LIN-10::GFP present in puncta versus the unlocalized baseline along the ventral cord (Fig. 8 E). We observed no difference

Figure 8. RAB-6.2 regulates LIN-10 localization. (A-D) LIN-10::GFP in wild-type (A), rab-6.2(ok2254j (B), rab-6.2(GDPj-expressing (C), and rab-6.2(GTPj-expressing (D) animals. (E) Fraction of ventral cord LIN-10::GFP fluorescence concentrated into puncta relative to the total. (F and G) GFP::RAB-6.2 in wild-type animals (F) and lin-10(e!439j mutants (G). (H and H') GLR-1 ::CFP (H) and MANS::YFP (H') in interneuron cell bodies. (H'') Colocalization was examined in the merged image for rab-6.2(GTPj; lin-10(e1439j double mutants. (I-K) GLR-1::GFP in lin-10(e1439j mutants (I) and rab-6.2(GTPj; lin-10(e1439j double mutants (J). GLR-1 accumulates in enlarged endo-somes (arrows), quantified in K. Bars, 5 pm. ANOVA with Dunnett's multiple comparison to wild type (***, P < 0.001) or rab6.2(GTPj (###, P < 0.001). Error bars are SEM.

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in GFP::RAB-6.2 puncta in wild type (Fig. 8 F) compared with lin-10 mutants (Fig. 8 G), indicating that whereas RAB-6.2 regulates LIN-10 subcellular localization, the reverse is not true.

If LIN-10 is a RAB-6.2 effector, the effect of RAB-6.2 on GLR-1 retrograde transport should require LIN-10 activity. Although RAB-6.2(GTP) can drive GLR-1::CFP to colocalize with MANS::YFP in wild type (Fig. 6 M), it cannot in lin-10 mutants (Fig. 8 H). We also examined GLR-1::GFP ventral cord localization in transgenic animals expressing RAB-6.2(GTP), which are also mutated for lin-10. In lin-10 mutants, GLR-1 accumulates in elongated postendocytic endosomes that are readily distinguished based on their size and morphology (Glodowski et al., 2007; Park et al., 2009). We found that if LIN-10 activity is absent, GLR-1::GFP accumulates in elongated endosomes along ventral cord dendrites regardless of the presence of RAB-6.2(GTP) (Fig. 8, I-K). Thus, RAB-6.2 promotes the retrograde transport of GLR-1 receptors back to Golgi at least in part through its interaction with LIN-10 as an

effector. As GLR-1 receptors accumulate in elongated endo-somes in lin-10 mutants, we speculate that LIN-10 also plays a separate, RAB-6.2-independent role in transporting GLR-1 from early endosomes to the degradation pathway.

The retromer regulates GLR-1 recycling

Another mediator of retrograde transport is the retromer complex. Thus, we examined GLR-1::GFP localization in the retromer mutants snx-1(tm847) and vps-35(hu68) as well as mutants for the SNX-1-associated rme-8(b1023). We found a significant decrease in the number and fluorescent intensity of GLR-1::GFP puncta in all three of these mutants (Fig. 9, A-D, and G; and Fig. S1 A) similar to the phenotype observed in rab-6.2 mutants, suggesting that the retromer also promotes GLR-1 recycling. Mutations that impaired GLR-1 endocytosis or ubiq-uitination blocked the effects of these retromer mutants (Fig. 9 G, Fig. S1, and not depicted), indicating that the retromer regulates GLR-1 trafficking at a step after endocytosis. Finally, turnover

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Figure 9. The retromer regulates GLR-1 retrograde transport. (A-F) GLR-1::GFP in wild type (A), snx-1(tm847j (B), vps-35(hu68j (C), rme-8(b1023j (D), rab-6.2(GTPj-expressing vps-35(hu68j (E), and rab-6.2(GTPj-expressing rme-8(b1023j (F) animals. (G) Mean fluorescent intensity of GLR-1 puncta (plus sign indicating wild type). (H and I) The mean integrated fluorescent intensity for individual PVC cell bodies (H) and nose-touch mechanosensitivity (I). (J) Mean nose-touch mechanosensory response is plotted for each trial during a train of nose-touch trials over a 5-min period. Genotypes are indicated by color. Rescue indicates rab-6.2(ok2254j mutants that express wild-type Venus::RAB-6.2 from the glr-1 promoter. Bars, 5 pm. ANOVA with Dunnett's multiple comparison to wild type (***, P < 0.001). Error bars are SEM. AU, arbitrary unit.

Figure 10. RAB-6.2 and LIN-10 colocalize with RME-8 in neurons. (A-D) Fluorescence from neuron cell bodies (A and C) and ventral cord dendrites (B and D) is shown. (A-B '' ) Cerulean::RAB-6.2 (A and B) colocalizes with Venus::RME-8 (A and B ; A and B show merged). (C-D ) LIN-10::CFP (C and D) colocalizes with Venus::RME-8 (C ' and D ' ; C ' ' and D show merged). Arrowheads indicate colabeled puncta. Bars, 5 pm.

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of GLR-1 in these retromer mutants is blocked when dominantnegative VPS-4 is expressed, suggesting that, in the absence of retromer function, GLR-1 is shunted by the ESCRT complex to MVBs, late endosomes, and lysosomes for proteolysis (Fig. 9 G and Fig. S1 A).

To examine whether RAB-6.2 and the retromer regulate GLR-1 via the same pathway, we performed an epistasis analysis between rab-6.2 and the retromer mutations. Double mutants for rab-6.2 and either rme-8 or vps-35 did not show a dramatically stronger effect on GLR-1 cluster number, suggesting either that these genes function in the same genetic pathway or that the retrograde pathway is completely blocked in the absence of either RAB-6.2 or the retromer alone, occluding a stronger phenotype in the double mutant (Fig. 9 G and Fig. S1 A). We also generated double mutants that contain a GTP-locked Pglr-1::rab-6.2(gtp) transgene, which can drive GLR-1::GFP retrograde transport from dendrites back to the cell body, and

either a vps-35 (Fig. 9 E) or rme-8 (Fig. 9 F) mutation. We found that RAB-6.2(GTP) can drive GLR-1::GFP retrograde transport back to the cell body regardless of the presence of VPS-35 or RME-8 activity (Fig. 9 H), suggesting that RAB-6.2 and the retromer complex can independently mediate GLR-1 retrograde transport under certain circumstances.

If RAB-6.2 and the retromer both promote GLR-1 retrograde recycling, we would expect RAB-6.2 and retromer components to be localized either together or nearby. The J domain protein RME-8 associates with the retromer complex, where it helps regulate clathrin dynamics at early endosomes (Shi et al., 2009). Thus, we coexpressed Cerulean::RAB-6.2 with Venus:: RME-8 in the command interneurons, and we observed that the two proteins were localized to either the same or adjacent puncta in both the neuron cell body (Fig. 10 A) or the dendrites (Fig. 10 B). We also found that LIN-10::CFP and Venus::RME-8 were colocalized (Fig. 10, C and D), often with Venus::RME-8

fluorescence surrounding LIN-10::CFP puncta. We also used the intestinal vha-6 promoter to coexpress either GFP::RAB-6.2 (Fig. S4 D) or LIN-10::GFP (Fig. S4 E) with mCherry::RME-8. GFP::RAB-6.2 was localized to puncta adjacent to mCherry:: RME-8-labeled puncta, whereas LIN-10::GFP and mCherry:: RME-8 showed an identical colocalization pattern in the intestine. Our results suggest that RAB-6.2, LIN-10, and the ret-romer complex are localized along an endosome-Golgi axis, where they together promote the retrograde recycling of cargo molecules, such as GLR-1.

The observed decrease in GLR-1-containing AMPARs along retromer mutant dendrites should also result in depressed GLR-1-mediated behaviors. Indeed, we found that retromer mutants have a similar low level of mechanosensitivity as rab-6.2 mutants (Fig. 9 I). Mechanosensitivity is assayed by presenting a train of physical stimuli to the tip of the animal's nose over a 5-min period, determining whether the animal responds by immediately reversing direction after each stimulus, and then averaging all of the stimuli from 10 consecutive trials for a given animal. Whereas nearly all wild-type animals respond to the first stimulus, only about half respond by trial 10, suggesting a slow rate of habituation. In contrast, rab-6.2 mutants and retromer mutants also respond robustly to the first stimulus but rapidly habituate to a response rate of <10% by trial 7 (Fig. 9 J). The rapid habituation observed in rab-6.2 mutants is fully rescued by the expression of a rescuing wild-type Venus::RAB-6.2 from the glr-1 promoter, suggesting that RAB-6.2 and retrograde transport of AMPARs not only maintain glutamatergic efficacy but also regulate the habituation kinetics of the touch circuit in the postsynaptic interneurons.

Discussion

Here, we have shown that RAB-6.2 and LIN-10 recycle AMPARs along a retrograde transport pathway in neurons so as to maintain synaptic strength (Fig. S5). GLR-1 AMPARs undergo activity-dependent endocytosis in a process that requires UNC-11/AP180 (Fig. S5 A; Burbea et al., 2002; Grunwald et al., 2004; Glodowski et al., 2007). Once endocytosed, AMPARs can either be sent to MVBs for eventual degradation, or they can be recycled back to the synapse. We propose that RAB-6.2 performs two functions to promote the recycling fate for these receptors. First, RAB-6.2, in its GTP-bound form, interacts with LIN-10, delivering LIN-10 to early endosomes (Fig. S5 B). We suggest that LIN-10, along with the retromer complex and RME-8, sequesters AMPARs into endosomal tubules that in turn give rise to retrograde cargo vesicles for the receptors (Fig. S5 C). Second, RAB-6.2, in its GTP-bound form, regulates the trafficking of these cargo vesicles to Golgi, including dendritic outpost Golgi as well as cell body Golgi (Fig. S5 D). Interestingly, RAB-6.2-decorated Golgi and LIN-10/RME-8-decorated endosomes are adjacent to one another in neurons and epithelia cells, perhaps indicating that Golgi-proximal endosomes favor this pathway. Once at Golgi, AMPARs can affiliate with new coreceptors and be resorted back to synaptic membranes (Fig. S5 E). Our results suggest that GLR-2-containing AMPARs do not rely on this pathway, indicating that different trafficking

pathways, such as the retrograde pathway, are used for subunit-specific AMPAR regulation.

Why would a channel use the retrograde pathway? Interestingly, several transporters have recently been shown to be retrograde cargo. The auxin efflux transporter PIN1 uses the retrograde pathway to move from the basal pole to the lateral face of stele cells (Jaillais et al., 2006, 2007). The Menkes protein copper transporter and the reductive iron transporter Fet3-Ftr1 are redistributed in the cell by the retrograde pathway in response to changes in copper and iron concentration (Petris and Mercer, 1999; Strochlic et al., 2007). Finally, the GLUT4 glucose transporter, which is regulated by insulin, uses the retrograde pathway to return to Golgi for repackaging into new storage vesicles (Shewan et al., 2003). Recently, N-methyl-D-aspartic acid receptors have been observed to traffic to Golgi outposts via an unknown pathway that utilizes SAP97 and calcium/calmodulin-dependent serine protein kinase (Jeyifous et al., 2009). Our findings raise the possibility that mammalian N-methyl-D-aspartic acid receptors and GLR-1 share an evolu-tionarily conserved transport pathway or that trafficking of multiple glutamate receptor types through Golgi outposts is mediated by the retrograde transport pathway.

Signaling molecules, such as Wntless/MIG-14, also use the retrograde pathway. Wntless is a sorting receptor for the Wnt family of morphogens, shepherding them along the secretory pathway for eventual secretion (Pan et al., 2008; Yang et al., 2008; Shi et al., 2009). Retrograde transport of Wntless/ MIG-14 allows it to return to the Golgi to associate with a nascent Wnt cargo molecule for another round of secretion. Like Wnt, AMPAR channels require a complex set of chaperones and coreceptors for surface delivery, and AMPAR channels themselves exist in diverse combinations of subunits, each with different trafficking fates and channel gating properties (Payne, 2008; Diaz, 2010; Henley et al., 2011). Thus, retrograde transport might allow the channel to associate with new or different chaperones or coreceptors. In support of this idea, we observed that although GLR-1 localization is impaired when retrograde transport was blocked, the localization of STG-1 (Wang et al., 2008) and SOL-1 (Zheng et al., 2004) seems unaffected. This would suggest that coreceptor interactions are reversible in vivo, with channels and coreceptors coming apart and reassembling according to the particular trafficking pathway being used. Recently, the Cornichon homology protein CNIH-2 has been shown to associate with AMPARs, although its exact role is controversial (Schwenk et al., 2009; Brockie and Maricq, 2010; Kato et al., 2010; Shi et al., 2010). We found a single CNIH-2 homologue in the C. elegans genome and showed that it is localized to puncta along dendrites in a manner that also requires retrograde transport.

Different combinations of AMPAR subunits themselves undergo different trafficking fates (Henley et al., 2011). AMPARs with "long tail" subunits (e.g., GluA1) are delivered into synapses in response to activity, whereas AMPARs with "short tail" subunits (e.g., GluA2) tend to cycle continuously in and out of synapses (Chung et al., 2000; Hayashi et al., 2000; Passafaro et al., 2001; Shi et al., 2001; Esteban et al., 2003; Lu and Ziff, 2005). We found that RAB-6.2 regulates

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GLR-1-containing channels but not GLR-2-containing channels; thus, GLR-1 homomeric channels and GLR-1/GLR-2 heteromeric channels might use different pathways for their recycling. Interestingly, these subunits have different affinities for scaffolding molecules, show different trafficking patterns in response to previous mechanosensory experience, and yield different habituation kinetics within the touch circuit (Emtage et al., 2009). Thus, RAB-6.2-mediated trafficking might play an important role in this or other types of behavioral plasticity in the touch circuit by dictating the specific GLR-1/GLR-2 subunit composition at the synapse. Indeed, animals displayed faster habituation to touch in mutants defective for the retrograde transport of GLR-1-containing AMPARs. Future tests of this idea will require a more thorough means for discriminating the subunit combinations.

The role of retrograde transport in neurons is poorly understood with one important exception: the amyloid precursor protein (APP). Changes in retromer gene expression are correlated with Alzheimer's disease (AD), and depletion of the retromer increases the production of Ap, one of the key pathological causes of AD (Small, 2008). Neuronal SorLA (sorting protein-related receptor) associates with APP and helps regulate APP retrograde transport to the Golgi; SorLA is also reduced in AD brains (Scherzer et al., 2004; Andersen et al., 2005; Offe et al., 2006; Nielsen et al., 2007). Retrograde transport also appears to help recycle the p-secretases BACE1 and BACE2, which influence Ap production (He et al., 2005; Wahle et al., 2005). Thus, APP retrograde transport might keep Ap production low in healthy neurons by keeping APP out of the endosome, the site where it becomes processed to produce Ap. Consistent with this idea, the Mints, which are orthologues of LIN-10, regulate APP and presenilin trafficking, as well as APP processing into Ap, although the exact mechanism remains controversial (Sastre et al., 1998; Mueller et al., 2000; Hill et al., 2003; Lee et al., 2003; Xie et al., 2005; Sano et al., 2006; Ho et al., 2008; Saito et al., 2008). Our results indicate that Mint proteins are effectors for Rab6 GTPases in neurons and could help explain how an evo-lutionarily conserved choice point in trafficking regulated by Mint-Rab6 has been co-opted for a pathological function in human disease.

Materials and methods

Strains

Animals were grown at 20°C on standard nematode growth media (NGM) plates seeded with 0P50 Escherichia coli. Some strains were provided by the Caenorhabditis Genetics Center. Strains were backcrossed to our laboratory N2 strain to minimize other genetic variation. The following strains were used: glr-1(ky176j, lin-10(e1439j, nuIs108[Pg^::glr-1(4krj::gfp], nuIs145[Pgir1::vps-4(dnj] (a gift from J. Kaplan, Massachusetts General Hospital, Boston, MA), nuIs25[Pgir1::glr-1::gfp], Pgir1::mans::yfp], odEx[Pgir1:: cerulean::rab-6.2(+j, Pgir-1::mans::yfp], odEx[Pgir1::cerulean::rab-6.2(+j], odEx[Pgir-1::gfp::cnih-2], odEx[Pgir1::gfp::rab-6.2(+j], odEx[Pgir1::gfp::rab-6.2(gdpj], odEx[Pgir1::gfp::rab-6.2(gtpj], odEx[Pgir-1::lin-10::cfp, Pgir1::venus:. rme-8], odEx[Pgir1::mans::yfp], odEx[Pgir1::mans::yfp], odEx[Pgir1::mrfp: syntaxin-13], odEx[Pgir1::rab-6.2(+j], odEx[Pgir1::rab-6.2(gtpj], odEx[Pgi, sol-1::gfp], odEx[Pgir1::stg-1::gfp], odEx[Pgir1::venus::rab-6.2(+j, Pgir-1::lin-10::cfp], odEx[Pgir1::venus::rab-6.2(+j], odEx[Pgi2::gfp::glr-2], odEx[Prab_6.2:: gfp], odEx[Pvha6::gfp::rab-6.2(+j], odEx[Pha-6::mans::mcherry], odEx[Pvha6:: tagrfp::rab-6.2(+j], odIs 1 [PgN::snb-1 ::gfp], odIs22[Pg,r1::lin-10::gfp],

odIs25[Pgir-] ::glr-1 ::cfp], odIs6[Pgir-]::mrfp], pwIs[Pvha-6::lin-10::gfp], pwIs[Pvha6::mcherry::rme-8], pwIs[Pvha6::venus::rme-8], rab-6.2(ok2254) (a gift from S. Mitani, Tokyo Women's Medical University, Tokyo, Japan), rhIs4[Pgr1::gfp] (a gift from W. Wadsworth, University of Medicine and Dentistry of New Jersey, Piscataway, NJ), rme-8(b1023), snx-1(tm847), unc-11(e47), and vps-35(hu68).

Transgenes and germline transformation

Transgenic strains generated in this study were isolated after microinjecting various plasmids (5-50 ng/ml) using rol-6dm (a gift from C. Mello, University of Massachusetts Medical School, Worcester, MA), ttx-3::rfp and ttx-3::gfp (a gift from O. Hobert, Columbia University, New York, NY), or lin-15(+) (a gift from J. Mendel, California Institute of Technology, Pasadena, CA) as a marker. Plasmids containing the glr-1 (a gift from V. Maricq, University of Utah, Salt Lake City, UT) or vha-6 promoters followed by the indicated cDNA construct were generated using standard techniques. Plasmids for examining rab-6.2 gene expression were made by PCR of 2 kb of upstream promoter sequence as well as complete coding sequences and introns and then subcloning the resulting product into a GFP expression vector. Transgenic animals expressing GFP::GLR-2 were generated by injecting pPB66 (Mellem et al., 2002). All resulting transgenes were introduced into the germline and followed as extrachromosomal arrays. The fluorophore-tagged reporters described in this paper have been previously demonstrated to be functional, except for RAB-5, RAB-7, and MANS, as mutants for their corresponding genes either do not exist or are lethal and thus cannot be easily tested for functionality.

Fluorescence microscopy

GFP- and RFP-tagged fluorescent proteins were visualized in nematodes by mounting young adult animals on 2% agarose pads with levamisole. Fluorescent images were observed using a microscope (Axioplan II; Carl Zeiss). A 100x, NA 1.4 Plan Apochromat oil immersion objective was used to detect GFP, Venus, CFP, Cerulean, mCherry, and mRFP signals of worms mounted on 2% agarose pads at room temperature. Imaging was performed with a charge-coupled device camera (ORCA-ERG 1394; Hama-matsu Photonics) using iVision v4.0.11 (BioVision Technologies) software. Exposure times were chosen to fill the 12-bit dynamic range without saturation. Maximum intensity projections of z-series stacks were obtained, and out of focus light was removed with a constrained iterative deconvolution algorithm (iVision). For most images, we captured the ventral cord dendrites in the retrovesicular ganglion region surrounding the RIG and AVG cell bodies.

The quantification of ventral nerve cord fluorescent objects (i.e., puncta and enlarged endosomes) was performed using ImageJ (National Institutes of Health) to automatically threshold the images and then determine the outlines of fluorescent objects in ventral cord dendrites. ImageJ was used to quantify both the shape and the size of all individual fluorescent objects along the ventral cord. This allowed us to distinguish between the small GLR-1::GFP puncta in wild-type animals and the enlarged aberrant endosomes (which have an elongated shape not observed in wild type) in mutants. Object size was measured as the maximum diameter for each outlined cluster. Object number was calculated by counting the mean number of clusters per 100 pm of dendrite length.

The quantification of PVC cell body fluorescence was performed using ImageJ to measure the integrated fluorescent density (the sum of all detectable pixel intensities per cell body) for each neuron. For the quantification of GLR-1::GFP and mRFP::SYN-13 colocalization, we fixed animals with ice-cold 1 % paraformaldehyde in PBS for 10 min and imaged them using a previously published protocol (Chun et al., 2008; Park et al., 2009). Images for neuronal cell bodies were taken using a confocal microscope equipped with the confocal imager (CARV II; BD) and a 100x Plan Apochromat objective, NA 1.4 (Carl Zeiss).

For quantitative colocalization analysis, all image manipulations were performed with iVision (v4.0.11) software using the fluorescent color voxels colocalization function. We applied an empirically derived threshold to all images for both the GLR-1::GFP channel and the mRFP::SYN-13 channel to eliminate background coverslip fluorescence and other noise (typically, <5% of pixels for each channel). The fluorescent intensity values for both the GLR-1::GFP and mRFP::SYN-13 channels were then scatter plotted for each pixel. Pixels with similar intensity values for both channels (within an empirically established tolerance factor) were counted as co-localized. To acquire the fraction of GLR-1::GFP colocalized with mRFP:: SYN-13, the number of colocalized pixels was normalized to the number of GLR-1::GFP pixels under threshold. To maximize our resolving power while observing the relatively small C. elegans neuron cell bodies, we restricted our analysis to a single focal plane taken through the middle of each cell body.

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Behavioral assays

The reversal frequency of individual animals was assayed as previously described but with some modifications (Zheng et al., 1999). Single young adult hermaphrodites were placed on NGM plates in the absence of food. The animals were allowed to adjust to the plates for 5 min, and the number of spontaneous reversals for each animal was counted over a 5-min period. 20 animals were tested for each genotype, and the reported scores reflect the mean number of reversals per minute. Nose-touch mechanosensation was assayed by placing young adult hermaphrodites on NGM plates with food. Individual young adult animals were allowed to collide with a human hair 10 consecutive times within a 5-min period. Activation of the reversal behavior was scored immediately after each contact with the hair stimulus, and the score was summed over the 10 trials. 30 or more animals were tested for each genotype, and the reported scores reflect the mean number of responses.

Patch clamp whole-cell recording

In vivo whole-cell recordings were performed at room temperature with an amplifier (EPC-10; HEKA) and Patchmaster software (HEKA) using a protocol described in previous studies (Wang et al., 2008; Ward et al., 2008). In brief, the head of glued worms was dissected, and the AVA neurons were exposed for patch clamp recordings in the bath solution. Recording pipettes were pulled from borosilicate glass. The pipette solution contained 115 mM K-gluconate, 25 mM KCl, 50 mM Hepes, 0.1 mM CaCl2, 1 mM BAPTA, 5 mM MgATP, and 0.5 mM NaGTP (315 mOsm, pH adjusted to 7.35, with KOH). The bath solution contained 150 mM NaCl, 5 mM KCl, 5 mM CaCl2, 1 mM MgCl2, 15 mM Hepes, 10 mM glucose (325 mOsm, pH adjusted to 7.35, with KOH). Voltages were clamped at —70 mV. Current data were sampled at 22 kHz. 1 mM glutamate was applied for 500 ms by pressure ejection.

GST pull-downs

Complete coding sequences for the LIN-10 PTB domain, RAB-6.2, and mutant forms of RAB-6.2 were introduced into the GST expression vector pGEX-2T-GW, and either GST alone or GST-tagged proteins were expressed in E. coli strain BL21 and purified using glutathione-Sepharose 4B beads (GE Healthcare) as described previously (Pant et al., 2009). Bacterial cultures in 2x yeast tryptone medium were induced at an OD60o of 0.5 with 0.1 mM IPTG and grown overnight at 15°C. Bacteria were lysed in bacterial protein extraction reagent (B-PER; Thermo Fisher Scientific) with EDTA-free protease inhibitor cocktail (Roche). The bacterial lysate was cen-trifuged at 4°C at 10,000 g for 20 min in a rotor (SS-34; Sorval). The soluble extract was applied to a glutathione-Sepharose 4B column equilibrated with lysis buffer. The column with bound protein was washed six times thoroughly with cold STET buffer (10 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1 mM EDTA, and 0.1% Tween 20). Complete coding sequences for the LIN-10 PTB domain, RAB-6.2, and its mutant forms were also introduced into the pcDNA3.1-2xHA-GW vector, and HA-tagged proteins were synthesized in vitro with the coupled transcription-translation system (TnT; Promega). For each binding experiment, in vitro synthesized HA-tagged proteins were added to the glutathione-Sepharose beads and incubated for 2 h at 4°C. After five washes in cold STET buffer and a final wash in cold STE buffer (10 mM Tris-HCl, pH 8.0, 150 mM NaCl, and 1 mM EDTA), proteins were eluted into loading buffer and separated by SDS-PAGE for Western blot analysis using anti-GST or anti-HA antibodies.

GLR-1::GFP Western blotting

Lysates were prepared from adult worms using a stainless steel dounce homogenizer (DuraGrind; Wheaton) and buffer A (50 mM Hepes, pH 7.7, 50 mM potassium acetate, 2 mM magnesium, 1 mM EDTA, and 250 mM sucrose), a protease inhibitor cocktail (Roche), and 10 mM N-ethylmaleimide. Membranes were isolated from clarified lysates by ultra-centrifugation and then suspended in buffer A plus p-mercaptoethanol, SDS, and DTT. Proteins were separated from membrane lysates by SDS-PAGE, and GLR-1 ::GFP or actin was simultaneously detected by Western blotting using a combination of anti-GFP antibodies (GeneTex, Inc.) and antiactin antibodies (MP Biomedicals). Quantitation was performed using ImageJ, averaging normalized GLR-1::GFP/actin ratios over four independent experiments.

Yeast two-hybrid interactions

Yeast two-hybrid experiments were performed by placing the indicated bait and prey cDNA sequences into the pEG202 bait vector and pJG4-5 prey vector. The resulting plasmids were cotransformed, along with the reporter plasmid pSH18-34, into yeast strain EGY48, and transformed yeast were recovered on -His-Trp-Ura dropout plates. Resulting colonies were

diluted in series on -Leu-His-Trp-Ura dropout plates to test for interactions based on growth.

Online supplemental material

Fig. S1 shows supplemental quantification data. Fig. S2 shows the localization of other synaptic proteins in rab-6.2 mutants. Fig. S3 demonstrates that the LIN-10 PTB domain interacts with RAB-6.2 in a yeast two-hybrid assay. Fig. S4 shows that RAB-6.2 is localized to Golgi in intestinal epithelial cells. Fig. S5 shows a model for RAB-6.2 regulation of AMPAR trafficking. Online supplemental material is available at http://www.jcb .org/cgi/content/full/jcb.201104141/DC1.

We thank the C. slogans Genetics Center, Villu Maricq, Joshua Kaplan, Shohei Mitani, and Bill Wadsworth for reagents and strains.

This work was supported by National Institutes of Health grants R01 NS42023 to C. Rongo and R01 GM067237 to B.D. Grant and a National Institute of General Medical Science grant to X.Z.S. Xu.

Submitted: 28 April 2011 Accepted: 30 November 2011

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